Added time taken to test census XML files, and added a new test case for
d1kcwa6, which is wrong in the census.
Fixed minor bugs in CLI options.
Record the average time taken at every print.
Removed CensusJob.FullInfo, which has been deprecated for a long time.
Reworked ConservedSequenceFinder so that it doesn't bother with
alignment, and instead runs HMMER for each protodomain.
Aha! Fixed bug where calls to getDomainsUnder and getAllDomainsUnder
were swapped.
Removed use of CensusJob.FullInfo.