merging desktop with remote
Update WES skat analysis pipeline. create new pipeline for annovar annotations
Create R script to compare two lists using CompareLists package
process annovar results
create script and parameter files for processing annovar results into pseq metadata format
Merge branch 'master' of https://bitbucket.org/jonathan_chung/wes
added option to filter or not filter the results
activate the trailing arguments
Update to import only certain columns
update parameter files for column description and column selection for pseq metadata
Update parameter files
Update format_annotations_for_pseq_import.R to work with parameter files and for dbNSFP20 annotations
corrected a formatting error in one of the descriptions
update format_annotations_for_qseq_import.R to work with yaml parameter files
Merge branch 'master' of https://bitbucket.org/jonathan_chung/wes
update parameter files
fixed bug. forgot to put comma into function convertToPseqList
create script for performing bhglm analysis on WES data.
I want to try and use a bayesian method for WES analysis