use gtdowload from 3.8.3 deb package on 10.04

now we can use an LSF queue other than lims-datatransfer
(more hosts we can run on)
run fillmd_for_sam
Merge branch 'master' of ssh://git/srv/git/genome
updated error message when BamQc can't find its input file
put rate limits back

since we can run on more hosts now, we don't want to overload
Merge remote-tracking branch upstream/$:{upbranch}