We no longer need to bundle avro.


git-svn-id: https://svn.salilab.org/imp/trunk@17464 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Fix namespace and name of generator script.


git-svn-id: https://svn.salilab.org/imp/trunk@17465 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Fix invalid comment.


git-svn-id: https://svn.salilab.org/imp/trunk@17466 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Fix links, and link to cnmultifit from multifit.


git-svn-id: https://svn.salilab.org/imp/trunk@17467 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Add whitespace so we don't accidentally make a doxygen comment. Closes issue
#259.


git-svn-id: https://svn.salilab.org/imp/trunk@17468 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
rename description file to dependencies.py

This makes it clearer that it is a python-syntax file and describes better what it does.

git-svn-id: https://svn.salilab.org/imp/trunk@17471 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
move module overview to README.md in module directory

This way the overview shows up nicely to people browsing the source on the command line, in git as well as doxygen. This patch also cleans up various
doc glitches, but there are a lot remaining

Close issue #196.

git-svn-id: https://svn.salilab.org/imp/trunk@17472 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
fix typos

git-svn-id: https://svn.salilab.org/imp/trunk@17473 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
merge commit collisions in moved overview.dox->README.md files

git-svn-id: https://svn.salilab.org/imp/trunk@17474 e91f8c7b-0e32-4433-a9ac-4502d39a4eab