Merge pull request #38 from dgianotti/master

Updated find.extreme.GCC.NDVI.R
Merge pull request #39 from dgianotti/master

Minor change to run.SS.model to use new find.extreme.GCC.NDVI function
Merge pull request #7 from EcoForecast/master

Updating files
Merge pull request #40 from dgianotti/master

get.site.data complete (but not really tested!)
Made some changes...
1. Removed crazy values from state X and r and change to NaNs
2. Pulls from a distribution
3. Split up plots out of loop just for plotting ease
Merge pull request #41 from AngelaRigden/master

Initial Ensemble changes
Josh and I:

SSLPM:
1. Fixed an idexing issue... look at

InitialEmsemble:
1. Fixed the initial distribution we are drawing from.
Merge pull request #42 from AngelaRigden/master

Josh and Angela:
Added an uncertainty plot
Merge pull request #43 from AngelaRigden/master

Added an uncertainty plot
saves plots of initial ensemble forecast to PDF files for each site
save output plot to PDF
save raw output to csv file so that it can be appended to for iterations
adding functions that will be used to update the forecast
found bug in initial conditions...using X from state space model for r input!
Merge pull request #44 from dgianotti/master

Yet another update to get.site.data and friends. Seems to be working wel...
Merge pull request #45 from dgianotti/master

Updated Operations.R and added Operations shell script.
Merge pull request #10 from EcoForecast/master

Update Dan's fork