I have written a fair amount of section 4.5 (algorithmic analysis) and updated
the evaluation chapter up through section 7.2 (added 7.1 - Notation and 7.2 -
evaluation metrics). I've also touched up Section 2.4 (Data and Digital
Representation) as well as Section 2.2 (Pyrosequencing), where I added some
text briefly describing primers and their relevance to pyroprints. I've also
added to Section 2.6 (Bacterial Strains and Clusters) information regarding
Diana's senior project/statistical experiment, modified pictures on pages 30,
31, and 34, and touched up Section 3.2 (Interim Tool).