removed envelope penetration check

git-svn-id: https://svn.salilab.org/imp/trunk@17413 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Add missing protocol to links.


git-svn-id: https://svn.salilab.org/imp/trunk@17414 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
sync RMF to d9db2af54dc6ee5bab0ba84f38c10752a8c90b55

git-svn-id: https://svn.salilab.org/imp/trunk@17416 e91f8c7b-0e32-4433-a9ac-4502d39a4eab