Suppresing mysql warnings for logging transcoder tasks.

refs #4872
Encoding error while extracting.

refs #1601
Attempt at limiting commands to be run 1 per file.

refs #4782
Updating versions

refs #1804
Mimicing gearman changes in dashboard

These changes were done in the MCP. Adding to the dashboard as well.
s/qubit/atom in dev-{helper,installer}
Remove stanza console from upstart service

Connecting the standard input to the console device is definitely
not necessary in this case.
Remove unneeded entries from apache.default
Update dev-* to use AtoM stable/1.3.x
Updating/adding copyright notices to source files.
Removed unusued file.
Fix ica-atom path, add switch -h to ln
Added warning dialog for normalization choice.
Rename approve transfer Jobs to Approve *type* transfer

refs #4747
Working on config for processing.
Got form-based XML configuration admin working in rough.
Deleted test script.
Refactoring.
Working on processing config GUI.
Added store aip support in rough.