Greatly expanded gene coverage
Merge branch 'unmerged' of github.com:WormBase/intermine into unmerged
Finished expanding gene, moving on to transcripts
* Created script to parse an intermine model file
* created script to generate acceptance test queries from mapping file.  Better option is to use perl intermine queries for testing.
expanded transcript fields added
Transcript model tested for validity
CDS expansion started
Changes to loader
new redeployment build file added
ant get-all-fasta produces correct fasta URLs
build downloads c_elegans fasta
build downloads all protein and genomic fastas
moved preprocessing directory to mine home dir
removed unused mine directories
renamed preprocess/wb-proteins to proteins
Build processes all downloaded proteins
Command: ant process-all-protein-fasta -lib commons-net-3.3/commons-net-3.3.jar
build fetches and processes gff3s for all species and their ID mapping files
forgot to add DataMap.java to index when it was created...
added descriptions to build, view with ant -p
backup works, ant backup-datadir
build deletes data dir, and fetches go file
Added gff3 preprocessing file from earlier into git
Build now processes gaf file