patch to ms_dmat
added code for hmmu2MSCJS models
reduced set of columns in parameters.txt
par converted to vector for call to optim for hmm
removed columns not used
Sped up reals calculation for HMM by shifting column deletion of dm to
create.dml
matrices only computed from first occasion until T. This properly
handles p=1 for first release occasion rathr than just first occasion
change made so it would handle -1 in formula of fixed effect
added type back into parameters.txt
Added whichlevel for hmmu2iMSCJS model
switched to upper case U in uncertain state models
change in arguments of reals; no longer uses parname
change in call for HMM models to set m=list with #states and #areas
(other strata level)
capture history values all changed to upper case; no longer case
sensitive
Merge branch 'master' of ssh://git@github.com/jlaake/marked.git

Conflicts:
	marked/R/proc.form.r