Ignore comment lines in tmhmm output
Explicitly request tmhmm short output
Update suite xml file with new version number
Started work on a FASTQ primer clipping (trimming) script.
Handle ambiguous primers (does not scale well with more than a few N characters)
Handle ambiguous primers using regular expressions
Preserve FASTQ variant in XML file
Preserve FASTQ variant in XML for FASTQ filter by ID
Implement primer searching with mismatches, also IUPAC matches
Move fastq_primer_clip tool
Moved fastq_primer_clip tool
Split out common code from fastq_primer_clip.py
Adding fasta_primer_clip.py+xml based on fastq_primer_clip.py+xml
Correct ID in XML for new fasta_primer_clip.py script
SFF primer trimming tool + bug fix for rev comp primers
Combine FASTA, FASTQ and SFF filter by ID tools
Fixed bug in FASTQ filter by ID script
Combine FASTA, FASTQ and SFF primer clipping tools into one
Remove separate FASTA, FASTQ and SFF primer clip tools
Use Biopython for reverse_complement