Faster fit parameters and hopefully better scoring in dirichlet
Merge branch 'em-algorithm' into development. Em not functioning as it should but does finish
No pseudo counts in probability calculation with dirichlet
Choose optimization algorithm for fitting dirichlet parameters
Merge branch 'dirichlet' into development
Merge branch 'em-algorithm' into development
Multinomial test can be run from any directory
Empty dna should be false not true
Merge branch 'development' of github.com:BinPro/ProBin into development
no need for izip
Print statistics nicely to output
using ln of expected clustering and sum
Merge branch 'development' of github.com:BinPro/ProBin into development
fixing output of ProBin
little error message
test data from the mock community
Merge branch 'development' of github.com:BinPro/ProBin into development
vectorized fit_nonzero_parameters was not doing the same thing as before. The original added one as pseudocount for the pseudo_sig, no matter how many contigs were in dna_l. The vectorized added pseudo count to all contigs in dna_l. Now it only adds one as before
added epsilon condition for the em algorithm
moved generated contigs