Reverted to hanif jacobians
Moved cpfJacobian .mu for better tracking
Removed species concentrations from state jacobian
Migrated species and reactions to seperate function

Still need to fix state dependencies, and BADLY needs refactoring
VAC Presentation
Removed species as states

Setup reactionModel to only be a function of inlet concentrations
Setup iteration

Also fixed a few function calls
Uncommented print statement
Added back in species resolution
Changed back to mupad calculated jacobian
Changed to dp_eff
Binary update
Fixed iter bug
Began level 2 sfcn for EKF
Corrected EKF model
Moved simUpdate to utilities
Removed optimizations for readability
Merge branch 'EKF-Revert' of github.com:jemofthewest/DOECPF into EKF-Revert
Ran simUpdate.pl and made fcn
Revert 'Removed optimizations'