change to MOST_ND file
Numerous changes
JSBMLWriter writes Gene Associations notes

and they are read back correctly
Duplicate metabolite abbrev appended w/ [1], [2]...

an edit and csv read
Duplicate metabolite abbrev works w/ paste
Duplicate metabolites work for csv load
Added MetabolitesDisplayCollections
MetabolitesDisplayCollections changes
Removed null check for reaction abbrev...

all reactions added to FBAModel in syn7002-2 model, but still will not
optimize
syn7002-2 optimizes
Gurobi Solver w/URLClassLoader added, had to...

revert back to old code to get it working
GurobiPathInterface works for setting path...

for URLClassLoader
Log files not generated on FBA
Data layer mostly updated
Data layer done, some code commented out since...

dependent on other layers
Presentation layer done except GraphicalInterface
Everything seems to be back to where it was..

before adding the new Gurobi code
Finished updating
Fixed bug where save as csv not saving boundary..

condition correctly, on Exit if Yes clicked, if load was SBML save is
SBML, if load csv save is csv, file name not loading in chooser for SBML
Fixed bug where csv's did not produce sMatrix...

correctly. Error was no trailing space on irreversible arrow.