added specieslist to ignore directory
Merge branch 'master' of git://github.com/rvosa/supersmart-phylota
changed TNRS base URL to taxosaurus
the name list needs to be a location relative to the project root, not the work dir
Merge branch 'master' of github.com:rvosa/supersmart-phylota
Merge branch 'master' of git://github.com/rvosa/supersmart-phylota
added workaround for error 500
Now no longer dies when _fetch_url fails, just returns undef
Merge branch 'master' of git://github.com/rvosa/supersmart-phylota
now _do_tnrs_search returns immediately if the initial request did not go through
Merge branch 'master' of git://github.com/rvosa/supersmart-phylota
timeout should (empirically) be longer than 60 as we are starting to get hangs after about 8000 consecutive calls to the webservice
now adds ti_root to FASTA def line
Merge branch 'master' of git://github.com/rvosa/supersmart-phylota
Added SQL script for creating features table. For some reason this table did not exist on Albiorix.
Adding script to write features table from gzip compressed genbank file, in tab-delimited format.
Merge branch 'master' of git://github.com/rvosa/supersmart-phylota
added search_feature method for querying the features table
adding script to write out all the species in a clade (e.g. in the Gentianales) without TNRS, just based on the NCBI taxonomy
Merge branch 'master' of git://github.com/rvosa/supersmart-phylota