windows fix - excludePaths are ignored mids/paths

Fix windows paths so excludePaths regex mids are not ingored, forward slash vs backslash

#### Documentation also needs to be updated for Windows users
Windows users (using a command prompt, not msysgit) should add quotes around the arguments for the batch file, see http://dojo-toolkit.33424.n3.nabble.com/js-doc-parse-TypeError-occurs-when-quot-parse-bat-config-config-js-quot-issued-td3995703.html


something like:
```
parse.bat "config=config.js" // arguments need to be enclosed in quotes
```
This will work with basePaths for example like:
```javascript
basePath: 'C:/opt/dojosrc/dojo-release-1.9.1-src',
// or
basePath: 'C:\\opt\\dojosrc\\dojo-release-1.9.1-src',
```

I've tested this on Linux and Win (with shell, cmd and node), you may want to test OSX too though I see no reason it'd fail.