move test of base log functionality into base

git-svn-id: https://svn.salilab.org/imp/trunk@16174 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
remove standards checks for protected

git-svn-id: https://svn.salilab.org/imp/trunk@16175 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
don't call do_show in object show

git-svn-id: https://svn.salilab.org/imp/trunk@16176 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
turn on wrapping of protected methods in swig

git-svn-id: https://svn.salilab.org/imp/trunk@16177 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
forgot to remove a file

git-svn-id: https://svn.salilab.org/imp/trunk@16178 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
use swig's native handling of protected methods, not the macro

This simplifies code, makes it easier to read and fixes issues with the doxygen docs becoming separated from the method name by the protection line

git-svn-id: https://svn.salilab.org/imp/trunk@16179 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
update history a bit better

git-svn-id: https://svn.salilab.org/imp/trunk@16180 e91f8c7b-0e32-4433-a9ac-4502d39a4eab