1. driver.sh is now the driving force 2. random karyotype ontologies are stored in local resources file directory structure 3. generaterandomkaryotype.clj only handles the generation of one random karyotype ontology 4. reasonrandomkaryotype.clj only handles the reasoning of one random karyotype ontology 5. graph.clj now includes the log scale for x 6. results of driver are stored in results.txt which is locally tweaked after automatic generation 7. generated log-linear and linear-linear included