new file:   UniProtGOA.py
	deleted:    upg_parser.py
	new file:   __init__.py
	modified:   UniProtGOA.py
	modified:   UniProtGOA.py
	modified:   UniProtGOA.py
	modified:   UniProtGOA.py
	modified:   UniProtGOA.py
	modified:   UniProtGOA.py
	modified:   UniProtGOA.py
	modified:   UniProtGOA.py
	new file:   utils.py
	modified:   UniProtGOA.py
	modified:   UniProtGOA.py
	modified:   UniProtGOA.py
	deleted:    utils.py
Avoid the sub_features deprecation warning in these methods.

This was being triggered in for example SeqRecord addition of
GenBank records.
Update MANIFEST to include Doc/examples/my_blast.xml

This was missing in Biopython 1.61, reported on the mailing list
http://lists.open-bio.org/pipermail/biopython-dev/2013-May/010599.html
by Lin (林行众).
Update MANIFEST to include Doc/examples/my_blat.psi

Identified by Lin (林行众) on the mailing list - thanks!
http://lists.open-bio.org/pipermail/biopython-dev/2013-May/010601.html
Fix testing with clustalw 1.83

Old test worked with clustalw 2.1 but the behaviour of 1.83 was
slightly different leading to the unit test wrongly failing:
http://lists.open-bio.org/pipermail/biopython-dev/2013-May/010599.html
Skip test_bgzf.py if Python's gzip is broken