LPS-33443 javadoc deprecations

@hhuijser - Hi guys. I went back to 6.1.0-ga1 to add the version information to the deprecatations and then rebased just those comments into trunk.

All remaining deprecations that don't already have version information can get tagged as 6.2.0 deprecations. If you have any concerns, please see LPS-33443 for the steps I took. Thanks.