Only log debug level if specified in the config
Removing default logging of DEBUG level, started moving more things to logger2 (logbook) rather than logger.
Moved most logging to logbook, made print to log
Merge in changes from updatream. Integrate logging and the progress recording
Processing progress logging to show progress step, sendign exceptions over the logbook logger
Started on a log message router added to scripts as bcbb_log_subscriber.py
Made the log subscriber script (bcbb_log_subscriber) more user friendly
Merge from upstream
Cleaned up some. Apparantly something is breaking the RabbitMQ connection in the
variantcalling step
Merge pull request #221 from vals/develop

Develop -> Master Merge Conflicts fix
Introducing HA to rabbitmq via Celery clients: http://docs.celeryproject.org/en/master/configuration.html#std:setting-CELERY_QUEUE_HA_POLICY
Implemented a hacky strategy for reconnecting after multiprocessing pools break the rabbitmq connection in automated_initial_analysis.py
Merge from upstream
Merge pull request #222 from vals/feature/rabbitmq-logging

Feature/rabbitmq logging
Merge pull request #223 from brainstorm/develop

Introducing HA to rabbitmq via Celery clients: http://docs.celeryproject...