- Fix: check whether genotype data is correctly loaded and samples are included.
Better constructor for variant combined filter
Merge pull request #43 from harmjanwestra/master

- Fix handling of TriTyper data
Fix in NullPointerException in Graphics.java
Merge pull request #44 from harmjanwestra/master

Fix in NullPointerException in Graphics.java
This fixes another bug with writing PDF files
This fixes another bug with writing PDF files
Merge pull request #46 from harmjanwestra/master

Another PDF fix
This fixes some issues with the PCA optimum step and also removes PCAOptimumGeneticVectors.java (to increase maintainability)
Remove uncommented code from Normalizer
Merge pull request #49 from harmjanwestra/master

PCAOptimum fix
Now outputs number of significant results after FDR.
Fix spelling mistake in Exception name
Fix pom.xml for jenkins testing
Merge pull request #51 from PatrickDeelen/master

Fix jenkins testing
Merge branch 'master' of https://github.com/molgenis/systemsgenetics.git
Fix for step size detection issue in 'pcaoptimum'
Fix spelling error in Exception name
Merge pull request #52 from harmjanwestra/master

Numerous small fixes
Compare 2 trityper datasets script