Updated the poms to get things working:

- Removed meltmedia's nexus repository.
- Introduced the JBoss depricated repository.
- Introduced the Apache snapshots repository.
- Changed commons logging from version 99 hack to provided.
- Changed some internal meltmedia releases of SNAPSHOT projects back into SNAPSHOTs.
- Commented out the NamespaceDoclet.  There is a cirular reference there.
- corrected JTA dependency.
- Removed dependencies to saxon version 9.1.0.2
- Added the Java.net repository.
- Updated shrinksafe dependency to one on central.
- Updated quartz dependency to one on central.