Feature/seqware 1681 vagrant

At this point I've tested running on Amazon and I was able to fully run our integration tests using the develop branch after bringing it up with Vagrant!  Awesome!  There's certainly more work to be done.  In particular, we need to verify the same thing will work with VirtualBox and also an Open Stack cluster.  But I think this is ready to merge now and I can pick up with a new feature branch in the next sprint.

Proof the full integration tests pass:

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[INFO] Reactor Summary:
[INFO]
[INFO] SeqWare ........................................... SUCCESS [1.618s]
[INFO] seqware-meta-db ................................... SUCCESS [3.184s]
[INFO] seqware-common .................................... SUCCESS [32.367s]
[INFO] seqware-queryengine ............................... SUCCESS [5:28.320s]
[INFO] seqware-queryengine-legacy ........................ SUCCESS [6.762s]
[INFO] seqware-pipeline .................................. SUCCESS [24.544s]
[INFO] seqware-webservice-dto ............................ SUCCESS [3.310s]
[INFO] seqware-webservice ................................ SUCCESS [2:18.238s]
[INFO] seqware-portal .................................... SUCCESS [10.294s]
[INFO] seqware-archetype-decider ......................... SUCCESS [1.021s]
[INFO] seqware-archetype-java-workflow ................... SUCCESS [0.069s]
[INFO] seqware-archetype-simplified-ftl-workflow ......... SUCCESS [0.082s]
[INFO] seqware-archetype-module .......................... SUCCESS [0.026s]
[INFO] seqware-archetype-legacy-ftl-workflow ............. SUCCESS [0.033s]
[INFO] seqware-archetype-simple-legacy-ftl-workflow ...... SUCCESS [0.035s]
[INFO] seqware-distribution .............................. SUCCESS [1:19.029s]
[INFO] seqware-ext-testing ............................... SUCCESS [22:01.198s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 32:31.687s
[INFO] Finished at: Tue Jul 23 21:22:02 UTC 2013
[INFO] Final Memory: 48M/308M
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