removed redundant spectrum and nmr spectrum into _purgatory (we need to creates an _obsolete class.
remaming CV owl file to get rid og Version Indication in file name. We use the versionInfor RA metadata (annotation property) for version now.
Merge branch 'master' of https://github.com/nmrML/nmrML
DJ update
Update Makefile
Merge branch 'master' of https://github.com/nmrML/nmrML
v1.3 File renaming to get rid of version in Filname (now stores as RA annotation property) infile. New Namespace (now set to http://nmrML.org/nmrCV to distinguish it from xsd namespace).  Importing DOAP: Add RA metadata using http://usefulinc.com/ns/doap#
Alignment of ID schemes:To archieve this, we substituted 541 occurances of "nmrCV_" for "nmrCV#NMR:" in the complete owl file. Then we substituited 710 occurrances of "nmrCV#MSI_" with "nmrCV#NMR:1" to alin the old MSI IDs to the new NMR prefix and 7 digit length. ID alignment:
 Right now, we find the two ID schemes:
     <!-- http://nmrML.org/nmrCV_1002021 -->
      <owl:Class rdf:about="http://nmrML.org/nmrCV_1002021">

     <!-- http://nmrML.org/nmrCV#MSI_400001 -->
     <owl:Class rdf:about="http://nmrML.org/nmrCV#MSI_400001">

These should be aligned into the new scheme:

    <!-- http://nmrML.org/nmrCV#NMR:1000003 -->
    <owl:Class rdf:about="http://nmrML.org/nmrCV#NMR:1000003">
        <rdfs:label xml:lang="en">newcls</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://nmrML.org/nmrCV#_purgatory"/>
    </owl:Class>
v1.3 File renaming to get rid of version in Filname (now stores as RA annotation property) infile. New Namespace (now set to http://nmrML.org/nmrCV to distinguish it from xsd namespace). Alignment of ID schemes:To archieve this, we substituted 541 occurances of "nmrCV_" for "nmrCV#NMR:" in the complete owl file. Then we substituited 710 occurrances of "nmrCV#MSI_" with "nmrCV#NMR:1" to align the old MSI IDs to the new NMR prefix and 7 digit length.  Importing DOAP, added RA metadata using http://usefulinc.com/ns/doap#, then removed doap import to get rid of confusing class top level.
v1.4 Empty outdated namespace declarations and NS prefix declarations were removed from the file. The following object properties were taken out of the owl file:
http://nmrML.org/nmrCV#has_regexp
http://nmrML.org/nmrCV#has_units
http://nmrML.org/nmrCV#part_of
Thier usage in the ole Cruz obo file was minor and has to be recreated by hand, but ideally with relations from btl2 with the following mapping:
http://nmrML.org/nmrCV#has_regexp-->
http://nmrML.org/nmrCV#has_units-->
http://nmrML.org/nmrCV#part_of-->http://purl.org/biotop/btl2.owl#isPartOf
refined IDs to be all 7 digits long, minor relabeling to be explicit, e.g. TecMag--TecMag format.
a P4 Tab that contains a few views on the ontology that could be useful in the development. You can import this tab from within P4 Windows/Import tab.
new chapters on new nmrCVtab and further useful configurations, i.e. OntoCheck.
a few updates
added readme files to Converter and new validator folder. Should we develop in these folders or in own github substructure , e.g. https://github.com/nmrML/validator ?
Minor CV refinements
I used OWLDOc (http://code.google.com/p/co-ode-owl-plugins/wiki/OWLDoc) to generate this browsable HTML  serialization from the owl CV v1.4.
v1.5 Major restructuring and redundancy removal, i.e. instruments are now captured as instrument attribute/models.
Ordered the sequence of CV-capturing elements in XSD, e.g. according to increased complexity, e.g. CVTermType, CVParamType, CVParamWithUnitType.
cv ref element order refined, added element definitions from issue discussions
updates on configP4 doc. MInor renamings of labels in CV (added _method postfixes). Addition of bookmarked entry classes in the CV:
List of terms required by current XSD: these were bookmarked in CV (annotation property) and are visible in the new nmrTab

CVTerm occurrences:
buffer-->buffer
solvent-->solvent
concentration standard type-->calibration compound , what is chemical shift reference ?  What calibration_reference_shift under calibration compound ?
concentration standard name	we here see a use-mention problem arising for the CV. The xsd should probably change here to avoid this.
encoding method (Quadrature detection method)	is this the same as encoding method ?
sample container-->NMR_sample_holder
(spectrum) y axis type-->coordinate system descriptor
post acquisition solvent suppression method	Two usages in xsd, but with differrent type ?  -->solvent suppression method
calibration compound	Two usages in xsd, but with differrent type ?-->calibration compound
data transformation method-->data transformation method
(spectral) projection method-->projection method
spectral denoising method-->spectral denoising method
window function method-->window function method
baseline correction method-->baseline correction
sample type-->NMR sample

CVParam occurrences:
file content-->data file content
software type-->software
source file type-->data file attribute (needs refactoring)
instrument configuration type-->instrument configuration
processing method type-->data processing method

CVParamType occurrences:
chemical shift standard-->chemical shift standard
solvent suppression method-->solvent suppression method
encoding scheme (Quadrature detection method)-->encoding method
window function parameter-->window function parameter

CVParamWithUnitType occurrences:
CVParamWithUnitType is currently not used in the xsd and dangling ! I assume ValueWithUnitType substitutes it ?

UserParamType occurrences:
No CV terms needed

ValueWithUnitType occurrences:
These will have to be used from the Unit ontology.
Change AcquisitionNucleus to CVtermType fixes #30
Change AcquisitionNucleus to CVtermType fixes #30