Fewer threads to STAR for better multi-procesing make
Inverse of shift->binding figure scripts
Use the merged annotation
Change name of dire to make clear that its direction
Fix the row_labels when specifying box_height
Make option to specify indices to use in SVG_heatmap
Code to see whether zygotic genes are more expressed in the anterior in the Zld mutants
Committing analysis of 10/30 and 11/5 to code
Tweaks to JTreeView

* Read in from the new annotation of WT data
* Lower "expressed" cutoff from 10 to 3
Move ant/post/central peak finding to PeakFinder

I was copy/pasting the function to various sub-programs, which was a
sign I needed to modularize it.

At the same time, I made it more reliable, and more flexible, so it can
take optional arguments for fold-change and minimum expression
thresholds.
Rename files for correct location, Use SVG_heatmap

Overhaul the plotting in DistributionDifference so that it is much
easier to use the actual output.
ZldShift now analyzes all TFs

Code likely from around October 8
Tweaks to CompareZldWT.py