Major additions to the Physics module.

- Added several new physics classes (FluidFlow, etc)
- Change the file names to __PhenomenaName__, and now call them as PhenomenaName just like all other classes.  The name space under physics was a mess the old way.
Renamed CapillaryPressure file
Subclassed pore diameter generation in CubicGeometry to prevent pores larger than the lattice spacing (which lead to negative throat lengths)
Added a constants dictionary to the GenericNetwork, as pn.const.  The can store things like temperature and pressure for isothermal simulations.
Updates to the translate and rotate GenericGeometry functions
Update to my script file to work with new Physics module conventions
Added a SaveNetwork class to __io__.

- Currently only has some crude and basically useless write to csv functionality, under tocsv()