[#53946071] Add alignments_in_bam to study message
[#53946071] Add seperate_y_chromosome_data to study message
Merge branch '53788909_add_seperate_y_chromosome_data_flag_on_study' into 53946071_add_required_fields_to_warehouse
Merge pull request #781 from JamesGlover/53946071_add_required_fields_to_warehouse

53946071 add required fields to warehouse