Minor bug in isRunContained, added test to demonstrate
Revert un-needed log4j.properties change
Fixes for SEQWARE-1612, 1693

Testing mode will send non-launched workflow commands to debug logging, the decider will short-circuit when the desired number of launches is reached, and
Decider working with https://jira.oicr.on.ca/browse/SEQWARE-1693
Correct tests
Extension of SEQWARE-1642

Suppress StudyReporter output
Revert "Extension of SEQWARE-1642"

This reverts commit a9970f1f96ae834f996bcb38d7a5dcc28b124d8a.
Only output when running/scheduling.

Also, squashed duplicates for output.
Also report launches for non-test mode
Merge pull request #65 from SeqWare/feature/SEQWARE-1693_decider_logic

Feature/seqware 1693 decider logic