In the current state it is necessary for two reason
1) Going through and fixing the cases javascript was a bit more complicated then regex-find-replace so I figured it is best left as a separate ticket
2) https://github.com/NUBIC/ncs_navigator_core/tree/a00eb11ef9c57d005dfa7aba923716c01c4ad7f7/app/assets/javascripts/surveyor those two files were modified in cases and also upgraded in surveyor. The merge was not trivial so I also left the old ones.

I made a ticket https://code.bioinformatics.northwestern.edu/issues/issues/show/3727 for upgrading jquery