Improved linkage script. Add full search option over all contigs. Add extra link categories inline and inward_or_outward to output.
Add read count for each contig in linkage script
Scaling before and after PCA, fixes #4
Add ambiguous linkage test cases.
Add linkage test case for orientation of short contig and read in middle
Readd multiprocessing
Merge branch 'master' of https://github.com/BinPro/CONCOCT
Output pca transformed means. Fixes #8
csv should use comma as delimiter. fixes #9
Added basic logging. Fixes #12
removed scaling before doing PCA as discussed in Issue 13
Not leaving commented code in codebase. Fixes #13
fixed spelling
Print absolute path of the directory where output is stored
Functionality of adding seed as input to CONCOCT done. The program is not running with a fixed seed though, the tests fail
Scaling can be turned of by the option --no_scaling
Scaling removed completely. Fixes #14
Added warning to readme
Use deterministic random state
Merge branch 'master' of github.com:BinPro/CONCOCT