Wrote ScopSupport. All the *ScopDescriptionCensus classes can now take
either Sun Ids or SCOP classification Ids. Deprecated
ScopDescriptionCensus.getDomainsUnder.
Updated TM-score cutoffs to 0.43 and 0.38.
Oops. Fixing compilation failure; forgot to commit.
Fixed mistake in main method: 2 arguments, not 3.
Added hooks for doing refinement (and made NamesCensus allow this).
Use ScopFactory.setScop(String). This is critical since the default
version of BerkeleyScopInstallation changed to 1.75B.
Temporarily commented out broken test since the functionality seems to
be working.