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Add dominant/co-dominant/allele/ models to co-evolutionary based Case-Control test.

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git-svn-id: https://svn.code.sf.net/p/snpeff/code@996 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b
Add dominant/co-dominant/allele/ models to co-evolutionary based Case-Control test.

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Build script ported to BDS

git-svn-id: https://svn.code.sf.net/p/snpeff/code@1001 3341ced4-5d85-40e2-8a85-8d6cb0b68e6b
VCF header: updated documentation.

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HGSV notation bug: "c." notation should be according to transcript strand. Fixed.

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