Paired-end code that properly ignores description part of FASTQ headers
fix add/remove buttons in Repeat elements
replace len( repeat_state ) with a variable so there's only one call
Avoid trailing whitespace
Updated tests for FASTQ interlacer/deinterlacer tool
tracing: first pass trace logging to fluentd
Improved encapsulation of job splitting logic, setting the stage for implicit splitting.
Replace access pattern 'job_wrapper.tool.parallelism' with 'job_wrapper.get_parallelism()' (a newly implemented method on JobWrapper) as a step toward enabling of per job parallelism (as opposed to per tool parallelism).
Rename ToolParallelismInfo to ParallelismInfo and move to jobs module to reflect the fact per-job (instead of per-tool) parallelism could also be a possibility (even if only in downstream Galaxy forks). Also, allow building these objects from dictionaries (in addition to traditional XML-based creation).
Merge with latest galaxy-central and resolve conflict introduced with pull request 82 was accepted.
Adding handler for httpexceptions.HTTPFound, so that the redirect tool will work (rather then causing an error)
The start of the API based annotation system
Adding exception catches to database 108 downgrade step to fix failure issue with downgrading postgres database (foreign key rules violated...)
Test for reinstalling an uninstalled repository that now has a new changeset adding repository dependencies.
Readd a request param that is no longer needed to a request between Galaxy and the tool shed to ensure backward compatibility.
Use correct index tables for setting dbkey of Tophat2 outputs.
Merged in kellrott/galaxy-central (pull request #109: Fixing database v108 downgrade failure)
Comment and naming fix for migration script 108.
Merged in fangly/galaxy-central (pull request #8: Paired-end code mishandles description of FASTQ headers)
Enable serving static files when running functional tests