merge,mcall: Fixed an indexing bug in Number=G tags mappings
merge: Abbreviated update_AN_AC code by taking advantage of new htslib API functions
call: Trio calling for sex chromosomes; Fix for -C alleles cases with all genotypes equally likely
merge: Updated test; call: added forgotten factor in index caculation
Get rid of %ld compilaiton warnings
filter: Backup commit
Ignore and clean version.h, which is a generated file
Add bcftools.1 man page extracted from samtools.1

Samtools has provided a unified samtools/bcftools man page since
release 0.1.17.  Now that bcftools is a separate project, move the
bcftools sections of the documentation to here, alongside the code
that they document.

This old documentation pertains to the old samtools/bcftools program,
which differs substantially from the current htslib-based bcftools.
But hopefully it's a useful beginning.
filter: The SnpGap and IndelGap filters now functional