Merge pull request #1 from manerotoni/CommMicroscope_branch

Antonio's Comm microscope branch. runMacro and runJython dialogues upgraded.
README updated, ver 1.1.1
Fixed installation instructions in README.
moved scripts from examples to scripts
pom.xml merged, redundancy resolved
RRADME updated
Merge with cmci/CommMicroscope
Change in Restart button (to test)
 Bugfix: -restart button now first removeMonitor before restarting it
update of script julia_max_proj.ijm