[FIX] fixed failing INIUpdater tests; introduced in [11762]

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11774 6adb6e08-d915-0410-941f-83917bcadc18
[FIX] added missing tools to ToolHandler (LowMem*, MRMTransitionGroupPicker)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11775 6adb6e08-d915-0410-941f-83917bcadc18
[FIX] fixed typo in pyTOPP/FileConverter.py + little cleanup

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11776 6adb6e08-d915-0410-941f-83917bcadc18
[API] renamed 'EmpiricalFormula::getString' to 'toString' for consistency with other classes and pyOpenMS support

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11777 6adb6e08-d915-0410-941f-83917bcadc18
[FEATURE] added generator for modified peptides

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11778 6adb6e08-d915-0410-941f-83917bcadc18
[FEATURE] added optimized implementation if only max one new modification is placed and no combinatorics are involved

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11779 6adb6e08-d915-0410-941f-83917bcadc18
[TEST] extended test to check already occupied modification sites in modified peptide generator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11780 6adb6e08-d915-0410-941f-83917bcadc18
[FIX] fixing mzml file tests, according to standard binaryDataArray does not seem to have a default data processing

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11781 6adb6e08-d915-0410-941f-83917bcadc18
[FIX] correct number of indices in test file

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11782 6adb6e08-d915-0410-941f-83917bcadc18
[FIX] fix on windows


git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11783 6adb6e08-d915-0410-941f-83917bcadc18