Separate locuswalker logic into independent python class
Several bug fixes and typos in strlocusiterator
Reimplement metrics_msitools using strlocusiterator
Add pyc and swp files to gitignore
Note about 2 weird STR loci in Tae-min's database
Add filters for min supporting reads and max difference between ref and observed alleles in strlocuswalker
Add CLI options for min supporting reads and max difference between ref and observed alleles in metrics_msitools
Add method to STRLocusIterator to add parser arguments to a supplied ArgumentParser object, do x-only and y-only checking in __init__ and use +inf as the default value for max_ref_diff
Use new STRLocusIterator.add_parser_args() to handle CLI parameters
New script to generate summarized STR candidate loci that pass STRLocusIterator filters
Remove early exit(1) from loop...
Add a naive GATK-style genotyper