Commit info:

- HGNC:Transcript_ID:Exon:cDNA_change:AA_change -> HGNC_transcript_info
- phastConsElements -> Phast_cons_elements
- gerp++elem -> Gerp_elem
- genomicSuperDups -> Genomic_super_dups
- dbsnp132 -> dbsnp_freq
- dbsnp137NonFlagged -> dbsnp_clinical_flag
- dbsnp_137_Id -> dbsnp_id
- SIFT_Whole_Exome -> SIFT
- PolyPhen_version_2_HumDiv_Whole-exome -> Poly_phen
- MutationTaster_Whole-exome -> Mutation_taster
- GERP++_Whole-exome -> GERP
- LRT_Whole-Exome -> LRT
- PhyloP_Whole-exome -> Phylo_p
- Main_Location_HPASubCL(120821) -> HPA_main_location
- Other_location_HPASubCL(120821) -> HPA_other_location
- Expression_type_HPASubCL(120821) -> HPA_expression_type
- Reliability_HPASubCL(120821) -> HPA_reliability
- Tfbs_transfac_Matrix_Database_(v7.0) -> Transfac
- snoRNA_&_miRNA_annotations -> snoRNA_miRNA_annotations
- IDN_GT_Call -> IDN:52-1-4A

New columns:

- GT_call_filter
- HBVDB
Changed ":" to "_" in GT call header column
changed short desc. IDN Example value
fixed column
Merge pull request #13 from henrikstranneheim/develop

Develop
Added lots of stuff about adding a new program
Clinical options, Changed some entries
added Headers
Stopped tracking doctree file
FIDSubmitJob, internal links, csv-tables
externalized csv annotation files
Basic overview of MIP file structure
Added IntersectCollect, Changed order in index file
Minor changes
Renamed structure file, corrected indent
Merge branch 'feature/stucture' into develop
Merge branch 'develop' of github.com:moonso/MIP_api into develop

Conflicts:
	docs/_build/doctrees/adding-new-programs.doctree
	docs/annotated_file.rst
Merge branch 'develop' of github.com:henrikstranneheim/MIP_api into develop

Conflicts:
	docs/index.rst
Stopped tracking build files
Added logo+header, added structure page