Merge pull request #476 from rleigh-dundee/zvi-roi-missing-develop

ZVI ROI fixes (develop)
Add kryo-2.21-shaded.jar to loci_tools.jar

This should fix classpath issues when using loci_tools.jar by itself.
Merge pull request #491 from melissalinkert/april-bug-week-develop

Final 4.4.7 bug fixes (rebased onto develop)
merge develop -D org -I include -E exclude: PR 482 (Remove 2003fc and related classes)
merge develop -D org -I include -E exclude: PR 485 (Fix export of multiple files (rebased onto develop))
merge develop -D org -I include -E exclude: PR 494 (Add kryo-2.21-shaded.jar to loci_tools.jar)