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Merge branch 'master' of https://github.com/clarencecastillo/dose

# By Clarence Castillo (2) and clarencecastillo (1)
# Via Clarence Castillo
* 'master' of https://github.com/clarencecastillo/dose:
  Implemented database logging function and parameters in previous simulations
  Implemented database logging function in reviving simulations
  Updated directory comments
recommitting test simulation for revival
fixed TypeError when logging Organism.status['blood'] into database when genome/chromosomes are not interpreted
1. chromosomes not interpreted. 2. changed logging database file name
duplicate file with 01_basic_functions_one_cel_deployment.py
added exception handling in database logging to prevent stalling in event of database error
Merge branch 'master' of https://github.com/clarencecastillo/dose

# By Clarence Castillo
# Via Clarence Castillo
* 'master' of https://github.com/clarencecastillo/dose:
  Renamed max_cell_population into tape_length
documentation for simulate()
Merge branch 'master' of https://github.com/clarencecastillo/dose

# By Clarence Castillo
# Via Clarence Castillo
* 'master' of https://github.com/clarencecastillo/dose:
  Reverted .gitignore to ignore everything in examples/Simulations
  Moved 01_basic_functions_one_cell_deployment_2013-10-13-1381664013.83 from example/Simulations into test_data
Merge pull request #7 from mauriceling/master

1. dumped examples/01db_basic_functions_one_cell_deployment.py as it is the same as examples/01_basic_functions_one_cell_deployment.py 2. exception handling for database logging errors 3. added dose.simulate() documentation