Make git_threads_shutdown run after git finalizers

When initiating a repository in order to extract a diff between the last
commit and the working directory and 'forget'/ignore to properly dispose
of the Repository instance you'll get an AccessViolationException on
application shutdown.

The problem is that the finalizer for Repository attempts to call
git_repository_free after git_threads_shutdown has been called meaning
that TLS-state which is potentially required as part of a shutdown isn't
available.

git_threads_shutdown is supposed to be called right before "shutting
down" the library. See [global.c L16-40][1]. At the moment the call to
git_threads_shutdown is done from the [AppDomain.ProcessExit][2] event.

The problem is that the MSDN doesn't guarantee that
[AppDomain.ProcessExit][2] runs after finalizers (on my machine it never
does and I'm guessing that's actually the expected behavior).

Here's an example of how to reproduce it:

```c#
static void Main(string[] args) {
    // path to repo which contains changes in the working directory.
    var repo = new Repository(@"e:\code\misc\libgit2sharp\");
    var changes = repo.Diff.Compare();
}
```

This will throw an AccessViolationException in git_repository_free. The
obvious and correct way to fix this is to simply make sure that the repo
instance gets disposed.

```c#
static void Main(string[] args) {
    // path to repo which contains changes in the working directory.
    using(var repo = new Repository(@"e:\code\misc\libgit2sharp\"))
        var changes = repo.Diff.Compare();
}
```

One way to tackle this problem would be to clearly state that you really
have to dispose your repositories but since libgit2sharp seems to be doing
a lot of work to shut down cleanly in finalizers today I thought we should
at least discuss it.

My hackish workaround is to create an object which derives from
[CriticalFinalizerObject][3] which calls git_threads_init in the
constructor and git_threads_shutdown in the destructor. Since this object
is a CriticalFinalizerObject its destructor will run after any 'regular'
destructors such as the Repository destructor thus ensuring that
git_threads_shutdown is the last thing to happen on the PInvoke-side
before the AppDomain is completely done.

From the blog of [Chris Brumme][4]:

> All normal finalizable objects are either executed or discarded without
> finalization, before any critical finalizers are executed.

[1]: https://github.com/libgit2/libgit2/blob/development/src/global.c#L16-L40
[2]: http://msdn.microsoft.com/en-us/library/system.appdomain.processexit.aspx
[3]: http://msdn.microsoft.com/en-us/library/system.runtime.constrainedexecution.criticalfinalizerobject.aspx
[4]: http://blogs.msdn.com/b/cbrumme/archive/2004/02/20/77460.aspx
Add some `DebuggerDisplay` love

I followed implementation best practices as described at http://blogs.msdn.com/b/jaredpar/archive/2011/03/18/debuggerdisplay-attribute-best-practices.aspx
Also added a Meta test to make sure the same implementation is used everywhere when using `[DebuggerDisplay]`.
Mark IndexEntry.State obsolete
Clone test repository before altering it
Make Reset() return a proper BareRepositoryException
Ensure a Reset() only accepts a committish
Make Diff.Compare() able to compare null Trees
Make Diff.Compare() able to compare null Blobs
Temporary revert of the null Trees diffing feature
Mark DiffTarget obsolete
Make RepositoryStatus expose an indexer
Remove duplicate obsolete calls
Implement git clean

This implements git clean and exposes the ability to remove untracked files from the working directory.
If / when git clean functionality is exposed directly by libgit2, we can update this to use that entry point.
Currently, we call git_checkout_index with a flags indicating that untracked entries should be removed. This does
not support other flags exposed by core Git, such as removing ignored files.
Update Checkout tests to reset and clean working directory

Checkout tests were originally written under the assumption that git
reset would remove untracked files (reset, as implemented in LibGit2Sharp,
originally mistakenly removed untracked files). This updates the tests
to reset and clean the working directory.
Update libgit2 binaries to 16e6cee

https://github.com/libgit2/libgit2/compare/1e99ce9...16e6cee
Merge pull request #260 from ben/great-renaming

The Great Libgit2 Renaming of 2012
Make repo.Config.Get() return the originating store

Signed-off-by: Unit Test <yoram.harmelin@gmail.com>
Fix parameter checks

Signed-off-by: Unit Test <yoram.harmelin@gmail.com>
Introduce Configuration.HasConfig()

Signed-off-by: Unit Test <yoram.harmelin@gmail.com>
Make Configuration.HasXXXConfig() obsolete

Signed-off-by: Unit Test <yoram.harmelin@gmail.com>