Refs #6339. Fixed several tasks. One is left

The problem with writing and reading the DetCal file for new TOPAZ runs may
be fixed by others.

Rotations now rotate the center of the panel, not only the orientation of the
panel.

The algorithm now removes previous output tables so they do not clash( with a
LOT of warning pop ups) with the new output table.

Groups for grouping can now have commas separating the groups.

The optimizing for the sample offset still has to be done
Refs #6339. Added options to system

One option was to rotate center of panels along with rotating around center.
The second option to take into account the sample positions has not yet been
  implemented