Added a Navbar with home and search capability
Added theme functions

The functions.php file will only be responsible for importing other PHP
files.

Each function library is stored in its own folder with the same name.

TODOs are added to the theme-options to indicate what options are going to
be provided to the theme user.
Added JQuery 1.9.1 libraries

Changed to use the local version to allow for offline development.
Added bootswatch CSS files

Only the CSS files are kept, the .gitignore was modified to ignore the
rest of the files that were included in the zip file:

https://github.com/thomaspark/bootswatch/archive/gh-pages.zip
Added Font Awesome 3.0

This will resolve problems on using icons from Bootstrap as they are not
scalable where Font Awesome icons are.

Only the css and font files are kept.
Theme customization and dynamic include

Theme specific functions and classes are put in the "trajano" namespace.

Error reporting made strict to reduce the chances of errors.

Theme customization implemented to support home icon, Bootswatch
selection, featured article backgroud image and sidebar location.

Droped the TODO of implementing a background image as the bootswatch will
take care of that.

All future PHP modules will be located in the include/ folder.
CSS files are enqueued from the css folder

This removes CSS declarations in the header and the style.css.
Home icon is now driven by theme customization
Javascript files are now enqueued from js

This allows new javascript files to be loaded up based on the contents of
the js folder.