Added the second version of the EQtlPermutationTranscriptionFactorAnalysis and two executable files that will later be used to search for eQTLs and LD SNPs in repeat (LINES, SINES, etc) regions.
Merge branch 'master' of https://github.com/molgenis/systemsgenetics
Merge branch 'master' of https://github.com/molgenis/systemsgenetics
Merge branch 'master' of https://github.com/molgenis/systemsgenetics
Merge branch 'master' of https://github.com/molgenis/systemsgenetics
Added version 3 of the eqtl functional enrichment. This class speeds up the performance but uses more RAM memory. Also fixed a bug in the calculation of the Fisher exact pvalue by subtracting the amount of hits for one TF from the total hits.
Merge pull request #153 from MatthieuBeukers/master

Functional Enrichment update