Application Parsing 2.0

Found and fixed a few bugs, and either grants or apps, or both, can be parsed now. Some changes have been made in adding command-line arguments and changing some of the config file format. I can document those this week. 

There also may be more bugs in match.py which will take a few more days to look into... line 58 (`if obj.__tablename__[:3] == "raw"`) just looks very suspicious.