adding some material to discussion
adding in some references
Updated workflow diagrams to reflect new command line flags
some revisions
png version since pdf version is too complex for our printer to print!!
A typo/bugfix related to #379 and a fix for #400
Update writing/phylosift.tex
Update writing/phylosift.tex
adding the abstract
changes to make output compatible with MG-RAST -- interleaved FastQ, gzip compressed, no spaces in headers
handle single sequencing error in the barcodes
Checked the mapping mismatches due to Bio::SeqIO header reading. Closes #407
Reworked introduction and some revisions to discussion
updating figure with results made by the release version of phylosift
standardized "phylosift" to "PhyloSift" thoughout MS
updated phylo diversity with results from phylosift release, and rareified to 1000 seqs/sample
Merge branch 'devel' of https://github.com/gjospin/PhyloSift into devel
fixing capitalizations
a variety of revisions
SConstruct for latex