Deleted print and fixed the keep option
Removed vim files
Merge branch 'master' of github.com:smilefreak/MerrimanSelectionPipeline
Removed negative one for snps
blah
:
Merge branch 'master' of github.com:smilefreak/MerrimanSelectionPipeline

Conflicts:
	selection_pipeline/standard_run.py
Merge branch 'master' of github.com:smilefreak/MerrimanSelectionPipeline
Merged changes with branch master