fix [<-,DataFrame for a value DataFrame with matrix columns


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/IRanges@78354 bc3139a8-67e5-0310-9ffc-ced21a209358
remove #include mingw/math.h


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/IRanges@78363 bc3139a8-67e5-0310-9ffc-ced21a209358
Switching IntervalForest to parallel CompressedIRangesList
added 'CompressedHitsList' class
Switching IntervalForest to parallel CompressedIRangesList
redid 'IntervalForest' documentation after moving to 'CompressedIRangesList' objects
add seqselect,matrix and some split methods that dispatch to
splitAsList even when only 'f' is a Vector; there obviously some 'x'
cases that relist can't handle, but it's better than always breaking
when 'x' is, say, an atomic vector and 'f' is an Rle.


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/IRanges@78415 bc3139a8-67e5-0310-9ffc-ced21a209358
improvements to FilterMatrix class


git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/IRanges@78416 bc3139a8-67e5-0310-9ffc-ced21a209358
check passed
Merge branch 'local-hedgehog'
Merge branch 'master' into IRangesList
check passed after merge