Remove 'All Files' option when choosing to open a reconstruction. This stops users attempting to open SMBL with this menu item.
Resolving tones to compiler warnings - primarily using deprecated methods or var-args calls (now suppressed).
Resolving more compiler warnings.
First round of suppressing unchecked type parameter warnings and adding in types where they can be added.
More generics warning suppression.
Removes duplication of directory creation at the binary inchi producer.
Changes the KEGGCompoundConnectivityLoader to use directory instead of web service.
Do not test tmpDir.mkdir, it should be created already.