Explain length ranges and shuffle generation
Fix some typos and note that length ranges also work with dlhmm
Fix whitespace
Begin explanation of the objective functions
Printing include the CLI help in smaller font
Reflect the changed path to the dlhmm binary in the build dir
Write Viterbi output of plasma into a file
Merge branch 'master' into external_dreme

Conflicts:
	src/plasma/CMakeLists.txt