VCFMAIN: Optimizing & refactoring code. Added a 'chain of responsabilities' to VariantMain
VCFCLI: Added some annots/filters to CLI
VCFRUNNER: Added launchPre & launchPost to Runner
VCFRUNNER: Added the pre/post initial code to Runner. Fixed the logger
VCFCLI: Added the gene and consequencetype filters to cli
VCFSERVER: Moved the WsSqliteManager to OpenCGA Storage
VCFSTATS: Changed the models and added new test
VCFEFFECT: Added the new library for effect calculations
Unified the Index & Vfc interfaces
VCFCLI: Added the Storage objects. Moved json-objects to Java-common-libs. Added opencga-storage dependencies