Changes to allow for lsq12 registration in registration_chain and pairwise_nlin when the registration method is mincANTS.

1. Updated minctracc atom so that default transforms will be set appropriately for lsq6 and lsq12 registrations if there is no last transform for source/target.
2. Wrote LSQ12 module to do basic lsq12 registrations as currently done in MICe-build-model. currently in minc_modules.py but may be moved.
3. Updated registration_chain.py and pairwise_nlin.py to use lsq12 if the registration method is mincANTS.
4. Added -tol = 0.0001 for -lsq6 and -lsq12 in minctracc atom. (Previously default was used.)