move phast include directory ahead of kent include to avoid conflict with gff.h when building halPhyloP
fix some typos when bedDir is a dir and not file
fix typo
lower default maxadjscan from 3 to 1
add rm *.o to all the makefiles to make sure we dont suck in extra object files when making library archives
add include of limits to global header
flip strand if most of blocks are on reverse strand