Added simple Genbank reader. Update CommandPrompt to use the Genbank
reader for .gb files. The code is just done as a first pass for proof of
concept.
Updated GenbankReader and files to properly handle AbstractSequence and
Compound types. Added testcase for DNASequence/Nucleotide sequence.
Added a GenbankProxySequenceReader class that takes an accessionid and
reads genbank data from either a file if it exists or the ncbi/eutils
web interface.
Merge remote-tracking branch 'updates/master'
Added GenbankParser and changed other Genbank code to use it.
More work on Genbank files, bringing them inline with interfaces.
Renamed FastaHeaderParserInterface to SequenceHeaderParserInterface.
Changed SequenceParserInterface to use BufferedReader instead of
DataInput to provide flexibility for GenbankParser. Updated
SequenceFileProxyLoader to BufferedReader.
Merge remote-tracking branch 'updates/master'
Fixed bug created in SequenceFile when converted to BufferedReader from
DataInput.
Merge branch 'master' of github.com:biojava/biojava
Merge branch 'master' of https://github.com/karlnicholas/biojava into karl