Fasta generation and bed generation now uses JEX framework.
Merge branch 'dev' into synfind
Tidied up SynFind.
The base directory is now based on genome id.
Enabled perl v5.10 features for SynFind.
Organisms now sorted by genome id.
Refactored genome preprocessing.
SynFind commands moved to JEX.
Merged dev into synfind.
Added job status to SynFind.
Merge branch 'synfind' into dev