Update readme.md
Upped to 0.2.0-SNAPSHOT
Added HiSeq 2500 support - PATCH REQUIRED (sqlstore/src/main/resources/schemas/patches/patch_20130315-0.2.0-SNAPSHOT.sql)
Fixed XML reading of byte-order mark checks so it now works for UTF-8 '\uFEFF' chars
Fix for last commit. Weird bug where BOM doesn't get checked if char included in one of the other arrays.
MISO-1 fix

Added support for dashes in some of the regex fields for Illumina run folder parsing
Updated IlluminaTransformer to turn on stacktraces

Turned on stack traces to try and find problem with BOM detection in Illumina XML files.
Classes to test new BOM checking code
+ Merged BOM checking improvements
Additions to RunFolderConstants to capture groups from folder names
Fixes to notification consumers to use RunFolderConstants instead of hardcoded group regexes
Updated pom with required dependency for run-tools
Update IlluminaRun.java

Hopefully final regex fix for MISO-1
Update IlluminaRun.java

Fixed stupid regex typo *sigh*.
+ Fixed intermittent NPE issue when retrieving disk cached objects and calling equals (getId() would be null). Changed domain objects ID field to be long primitive instead of wrapper.
+ Listing tables are now in datatable format. Deprecating tablesorter eventually.
+ Analysis page now tracks failed jobs separately to pending tasks.
+ Started on notification system request service.
+ Notification system can now track certain failed Illumina runs, i.e. when RTA is terminated. HiSeq 2500 rapid mode lane count now supported (2 instead of 8 lanes).
+ JIRA REST API integration upped to v2
+ Changes to logging so that debug logs will rotate into logs/miso_debug.log
Fix for printer admin page so that Add Printer Service button is visible when no printers are already available.
[MISO-2] Added check when clicking Add Printer Service multiple times
Javadoc generation support.

- Added javadoc stylesheet for Java 7 compatibility. Fix pom.xml to include this.

- Generate javadoc using "mvn clean -P external javadoc:aggregate"
Update pom.xml

Added javadoc plugin to build section, not just reporting.
Fix to stop PacBio run save duplication

PacBio runs were being duplicated on notification save due to new runs being added to the runsToSave collection twice.
+ MISO-4 Implemented changes required to support a single miso.baseDirectory configuration that is then used in relevant other configurations, e.g. ehcache diskstore path, logging directories, etc

+ Enforced the UTF-8 build encoding property for all compilation profiles. This should hopefully fix some of the regex compilation wierdness with non-English alphabets (thanks Sven!).

+ Rapid-run mode HiSeq notification was not picking up correct run status thanks to log file modifications. Thanks Illumina.