Notes on findGhosts
Made StructureFactor* log instantaneous maximum
Merge branch 'master' into devel
Notes on findGhosts.
Merge branch 'devel' of github.com:/dmorse/simpatico into devel
Modify completeness test GroupSTorage::markSpanningGroups
Merge remote branch 'origin/devel' into devel
Minor changes found when checking perturb serialization.
Merge branch 'devel' of github.com:/dmorse/simpatico into devel
Removing unused DdMd::(Const)BondIterator typedefs.
Commit notes/mcMd/BreakupSimulation notes on forcefield idea.
Adding notes/ddMd/Molecule
Changing doc/notes/ddMd/Molecule
Editing documentation.
Correcting accidental addition of several files.
Merge branch 'devel' of github.com:/dmorse/simpatico into devel
Commenting out paranoid checks in TwoStepIntegrator.
Changing doc/manual/.gitignore to ignore *.dox~ auxiliary files.
Minor change to Simulation.h, editing documentation.

Conflicts:

	src/mcMd/simulation/Simulation.h
Small changes to user-modifiable makefiles.