Did not have the true latest version for clojure-contrib-1.2.0-mlab.jar ...
Refactored new-rnas, new REST actions for gaisr command: embl-to-nc, entry-file-intersect, rna-taxon-info
Fix issues with cm placement in run-config-job and incorrect regexs in parse-config-file
New CDF baesd support for automatic cutoff computation for FFP similarity/comparison
Several new things: new next-sto, utils/take-until-nochange, various fixes, and new name space utils.clustering, with initial kmeans++.
cluster validity indices S-Dbw-index, and Davies-Bouldin, new means, stdev, variance, avg-variance, etc; refactoring of dists, but not done
add number key freq map abilities (alternate weighted values) to mean and median
better way of doing number keyed freq map median
generalize weighted collections to just be freq maps
Fixup variance for number pair collections and refactor generalize mean and such for pair colls
Fix nasty bug in defparameter; declare needed in dist for get-hitonly-names
merge to fork
Merge remote-tracking branch 'upstream/master'
Add covar, pearsons; fix up var, stdev, median, etc for feqmap weighting; about half opts conversion done
Finish opts conversion for entropy measures in probs-stats; fix transpose handling of singleton strings; Add constraint check for empty set mean & median
update for mean conditions when input nil
add declaration for forward use of std-dev in correlation in probs-stats
alias for sd
Merge remote-tracking branch 'upstream/master'