update readme
prepare an executable with opts parser
read name
comment out
remove sequences file
support cmd options
write the parser
test data
improve the command line parsing
new method clusters returns objects of instance Cluster
clean the file
remove bug in cluster_id method
remove call to enumerable
add each_cluster block to iterate through each cluster object
update the readme
update to bioruby 1.4.3
Version bump to 0.1.0