Small fix and turned debug off
Modularization
More modularisation
Don't insist on a specific column order of number
Delegated some functions to the dedicated PreprocUtils module
Changes
Script name change
Better default for trait name
Script to estimate ancestor's trait value using phylogenetic independent contrasts
Fixed bug that overwrote BLAT results
Option to specify the minimum coverage and identity
Slightly relaxed default parameters
More work on PIC
Save and re-use pruned tree + clean taxonomic strings
Started input tree cleaning
Fully working version of trait_by_clade_pic
Some cleanup
Started including GG ID but also GG taxonomic strings from GG tree
Script to replace GG ID by ID of cluster representative sequence
Improvements