sync RMF to a3269dca17e84eca34da61e9ed71fc02d6e4e4a5

git-svn-id: https://svn.salilab.org/imp/trunk@16057 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
sync RMF to 43287cca5203036fb63a7faf9eb2b7c044159f39

git-svn-id: https://svn.salilab.org/imp/trunk@16058 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
sync RMF to edfcf8a574ff4eafed836b8439fc069de6c9f914

git-svn-id: https://svn.salilab.org/imp/trunk@16059 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
nested locks are a bad thing

git-svn-id: https://svn.salilab.org/imp/trunk@16060 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
log task starts and stops

git-svn-id: https://svn.salilab.org/imp/trunk@16061 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
fix typo

git-svn-id: https://svn.salilab.org/imp/trunk@16062 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
disable log contexts when in parallel blocks

git-svn-id: https://svn.salilab.org/imp/trunk@16063 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
work around compiler bug

git-svn-id: https://svn.salilab.org/imp/trunk@16064 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
fix non omp compilation

git-svn-id: https://svn.salilab.org/imp/trunk@16065 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
modified the way Rg and chi were returned for foxs and crysol



git-svn-id: https://svn.salilab.org/imp/trunk@16067 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
sync RMF to 095990ec6b40c14021ff410932c45cc57b9f4a7e

git-svn-id: https://svn.salilab.org/imp/trunk@16068 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Drop unnecessary auto_ prefix.


git-svn-id: https://svn.salilab.org/imp/trunk@16069 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Add a --version option; show IMP copyright info and URL in 'help'.


git-svn-id: https://svn.salilab.org/imp/trunk@16070 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Don't require zsh for no reason.

git-svn-id: https://svn.salilab.org/imp/trunk@16071 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
make sure to update the version number after a commmit too

git-svn-id: https://svn.salilab.org/imp/trunk@16072 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
make sure to ignore the VERSION file

git-svn-id: https://svn.salilab.org/imp/trunk@16073 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
fix post-checkout as no arguments are passed to the script

git-svn-id: https://svn.salilab.org/imp/trunk@16074 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
use RMF.h in swig wrapper files

git-svn-id: https://svn.salilab.org/imp/trunk@16075 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
add special purpose installer for RMF to avoid relinking

git-svn-id: https://svn.salilab.org/imp/trunk@16078 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
found two big bugs
- sigma lower bound was being set to the value of the upper bound
- gamma scaling factor in normal case was wrong (glitch in revision?)



git-svn-id: https://svn.salilab.org/imp/trunk@16080 e91f8c7b-0e32-4433-a9ac-4502d39a4eab