updated all scripts but profile. moved config / configure around and will untrack conf/ folder contents.

--HG--
rename : conf/php/mongo.ini => src/mongo.ini
rename : conf/nginx/example.com.conf => src/nginx_conf/example.com.conf
rename : conf/nginx/example.com.https.conf => src/nginx_conf/example.com.https.conf
rename : conf/nginx/nginx.conf => src/nginx_conf/nginx.conf
set up configure to copy over bash files too
adding readme stub for conf