Added a convenience getScop(String) method.
Added getTMScoreAlternate().
Made updateSuperposition() set block rotation matrices and shift
vectors.
Added a demo for using FastaAFPChainConverter for display.
Added an extra CP test, and fixed a test to work with change in
updateSuperposition().
Merge branch 'master' of https://github.com/dmyersturnbull/biojava.git
Merge branch 'master' of https://github.com/biojava/biojava
Added another CP factory method.
Merge branch 'master' of https://github.com/biojava/biojava
Added support for SCOP com files. ScopDatabase now has a getComments()
method.
Created tests for ScopInstallation and BerkeleyScopInstallation.
Return an empty list when sunId is not listed, rather than null.
adding new calcRotationAngleInDegrees
now using 4HHB as a standard example