Update ParquetReader to take Configuration as a constructor argument.

This enables schema projection for both AvroParquetReader and
ThriftParquetReader by allowing configuration of
AVRO_REQUESTED_PROJECTION, THRIFT_COLUMN_FILTER_KEY, and
PARQUET_READ_SCHEMA.
Disable the time read counter check in DeprecatedInputFormatTest.

This mirrors the commit 6dfd97551fc1b8606704dcf656b185b34ceffcd4
which disabled the check in TestInputOutputFormat.
Fix a maven warning about a missing version number.

This change follows the POM structure seen in other modules by setting
the version to ${maven-jar-plugin.version}.