Pindel submodule tracker genome/pindel
Make pindel0.2.5 available in gmt run-pindel
Updated BioSamtools::ErrorRate to get binaries from /gsc/pkg/ instead of /gscuser/ifergusen/bin.  This is quick fix to allow us to move forward on testing of the standalone GMS.  Once errorrate is Debian packaged (in progress) this code will be replaced with something cleaner
Merge branch 'master' of ssh://git/srv/git/genome
Remove hard coded paths in ErrorRate.pm and use ENV{$GENOME_SW} instead
Blithely update the diffs for this test.
Blithely update the diffs for this test.