Transcriptome assembly v1.0 in development

1) in silico spike-in
2) cut, trim and QC
3) normalize
4) merge paired reads
5) assemble!

Updated README.txt
Update to script to simulate mRNAseq reads for in silico spike-in to validate transcriptome assembly. New script to perform complete in silico transcriptome assembly to validate that the in silico reads will assemble at all.
Debugging transcriptome assembly simulation
Debugging transcriptome simulation script. Ready up to actual assembly stage
Completed simulation of Illumina sequencing through mapping and gene counts. Looks like it's working! Started modifications to files for 'true' assembly