Merge branch 'hotfix/fix_sample_run_metrics_bug' into develop
Merge remote branch 'scilifelab/develop' into develop
Add controller for best practice reports. Update template.
Update template and add samples table
Fix merge conflict in test_db.py
Delete get_customer_names
Remove unused function map_srm_to_name
Update report template. Include samplename to customer name mapping in report.
Merge remote branch 'scilifelab/develop' into develop
Make phix option accept lane:error dict
Make phix option accept single-valued phix. Add function _get_phix_error_rate
Reorganize statusdb tests; all tests that rely on connections now live in tests.full.test_db
Add function to get latest library prep
Add option 'include_all_samples' and functionality to only include last library prep. Fixes issue #157
Bug fix: fix getting instrument for flowcell
Fix testing issues in test_pm_deliver
Merge remote branch 'origin/develop' into develop
Add option from_ssheet to bcbio.run to allow for starting analyses from SampleSheet.csv files - useful for MiSeq data
Correct columns for report output. Add debugging info and custom sequence capture key
Merge branch 'hotfix/get_read_pairs_from_demultiplex_stats' into develop