modified to use Casava 1.8+ headers
Merge branch 'master' of github.com:SciLifeLab/scilifelab
Merge pull request #14 from b97pla/master

Update to use Casava1.8+ fastq headers
Run command now in bcbio controller
Add query yes no to run
Sample naming issues
Add check for files; if pipeline has started, it unzips zipped files. Change extension if files not found
Merge branch 'feature/pm' of github.com:percyfal/scilifelab into feature/pm
Bug fix related to rounding
Adds customer reference from ProjectSummary document
added parseable arguments
Merge pull request #15 from b97pla/master

Added passing parameters to script
Add max_node_jobs
Fixed type conversion issue relating to ordered amount of reads
Merge remote-tracking branch 'central/develop' into develop
Merge remote-tracking branch 'central/master'
Merge conflicts
Some further format checking
Move project_management to scilife module
Update develop